Dynamic programming re-ranking for PPI interactor and pair extraction in full-text articles
نویسندگان
چکیده
منابع مشابه
Extended dependency graph for BioC-compatible protein-protein interaction (PPI) passage detection in full-text articles
Protein-protein interaction (PPI) is important in the field of experimental biology as well as bioinformatics. In BioCreative V, we participated in the BioC task and developed a PPI system to detect passages with PPIs in the full-text articles. By adopting the BioC format, the output of the system could be seamlessly added to the biocuration tool with little effort required for the system integ...
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Increasingly, as full-text scientific papers are becoming available, scientific queries have shifted from looking for facts to looking for arguments. Researchers want to know when their colleagues are proposing theories, outlining evidentiary relations, or explaining discrepancies. We show here that sentence-level annotation with the CISP schema adapts well to a corpus of biomedical articles, a...
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Various methods have been proposed to extract genetic protein-protein interactions from abstracts. These methods are unable to specify the interactions in which molecules are physically related and fail to explore the abundant evidence all over the articles. In this paper, we present a method of mining physical protein-protein interactions by exploiting profile feature from full-text articles d...
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Molecular biology and literature databases represent essential infrastructure for life science research. Effective integration of these data resources requires that there are structured cross-references at the level of individual articles and biological records. Here, we describe the current patterns of how database entries are cited in research articles, based on analysis of the full text Open...
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Other research has shown that although the abstract is more information dense, the full text of a scientific article in the biomedical domain has much greater information content.1 We know from observing indexers and studying their indexing process that some of the assigned MeSH concepts do not appear in the abstract. The indexing manual also dictates that the abstract should not be used during...
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ژورنال
عنوان ژورنال: BMC Bioinformatics
سال: 2011
ISSN: 1471-2105
DOI: 10.1186/1471-2105-12-60